How to cite

Hubverse project

To cite the hubverse project as a whole, please cite the project descriptor preprint:

Notehubverse project citation

Consortium of Infectious Disease Modeling Hubs; Kerr M, Borchering R, Castro Rivadeneira AJ, Contamin L, Funk S, Hochheiser H, et al. Coordinating collaborative infectious disease modeling projects with the hubverse [Internet]. medRxiv; 2025 [cited 2025 Nov 26]. p. 2025.10.03.25337284. Available from: https://www.medrxiv.org/content/10.1101/2025.10.03.25337284v1

BibTeX:

@article{cidmh2025-hubverse,
    title = {Coordinating collaborative infectious disease modeling projects with the hubverse},
    author = {Hubs, Consortium of Infectious Disease Modeling and Kerr, Melissa and Borchering, Rebecca and Castro Rivadeneira, Alvaro J. and Contamin, Lucie and Funk, Sebastian and Hochheiser, Harry and Howerton, Emily and Krystalli, Anna and Shandross, Li and Reich, Nicholas G.},
    journal = {medRxiv},
    year = {2025},
    url = {https://www.medrxiv.org/content/10.1101/2025.10.03.25337284v1},
    doi = {10.1101/2025.10.03.25337284},
}

HubEnsembles package

If you used the hubEnsembles package in your work, please cite the following preprint:

NotehubEnsembles citation

Shandross L, Howerton E, Contamin L, Hochheiser H, Krystalli A, Consortium of Infectious Disease Modeling Hubs, et al. Multi-model ensembles in infectious disease and public health: Methods, interpretation, and implementation in R [Internet]. medRxiv; 2025 [cited 2025 Nov 26]. p. 2024.06.24.24309416. Available from: https://www.medrxiv.org/content/10.1101/2024.06.24.24309416v2

HubDocs site

To cite the hubverse documentation site, please use the format below. Be sure to update the release number and date. To find the most current release number and date, go to the hubDocs GitHub repository and look for the information in the middle of the right-hand column under Releases.

NotehubDocs citation

The Consortium of Infectious Disease Modeling Hubs. HubDocs: Documentation for Collaborative Modeling Hubs. GitHub release v5.1.0, 13 Jun 2025. URL: https://github.com/hubverse-org/hubDocs Available from: https://docs.hubverse.io/en/latest/

Hubverse landing website

To cite the hubverse landing website, please use the format below.

Notehubverse website citation

The Consortium of Infectious Disease Modeling Hubs. Hubverse Website. URL: https://hubverse.io/

Specific hubverse packages

  • To cite a specific hubverse R package, such as hubUtils, run citation("hubUtils") in your R console to find the appropriate text.
  • To cite a specific hubverse Python package, such as hub-data, please use the format below. Be sure to replace the text inside <angle brackets>, including the package name, release number, date, repository link, and PyPI page. To find the most current release number, date, search for the specific package in PyPI or find the package in the hubverse Python packages page and look for the information in the middle of the right-hand column under Releases.
Notehubverse Python package citation

The Consortium of Infectious Disease Modeling Hubs. <Hubverse Python Package>. GitHub release <version>, <date>. URL: <repository link> Available from: <PyPI link>

For example, to cite the hub-data package, use:

Notehub-data citation

The Consortium of Infectious Disease Modeling Hubs. hub-data. GitHub release v0.2.0, 10 Nov 2025. URL: https://github.com/hubverse-org/hub-data Available from: https://pypi.org/project/hubdata/0.2.0/