How to cite

Hubverse project

To cite the hubverse project as a whole, please cite the project descriptor paper:

Consortium of Infectious Disease Modeling Hubs, Kerr, M., Borchering, R., Castro Rivadeneira, A. J., Contamin, L., Funk, S., Hochheiser, H., Howerton, E., Krystalli, A., Shandross, L., & Reich, N. G. (2026). A software platform for collaborative infectious disease modelling. Nature Health, Article s44360-026-00145-7. https://doi.org/10.1038/s44360-026-00145-7

Consortium of Infectious Disease Modeling Hubs, Kerr M, Borchering R, Castro Rivadeneira AJ, Contamin L, Funk S, Hochheiser H, Howerton E, Krystalli A, Shandross L, Reich NG. A software platform for collaborative infectious disease modelling. Nat Health. 2026; Article s44360-026-00145-7. doi: 10.1038/s44360-026-00145-7.

@article{cidmh2026-hubverse,
    title     = {A software platform for collaborative infectious disease modelling},
    author    = {{Consortium of Infectious Disease Modeling Hubs} and Kerr, Melissa and Borchering, Rebecca and Castro Rivadeneira, Alvaro J. and Contamin, Lucie and Funk, Sebastian and Hochheiser, Harry and Howerton, Emily and Krystalli, Anna and Shandross, Li and Reich, Nicholas G.},
    journal   = {Nature Health},
    year      = {2026},
    doi       = {10.1038/s44360-026-00145-7},
    url       = {https://www.nature.com/articles/s44360-026-00145-7},
}

HubEnsembles package

If you used the hubEnsembles package in your work, please cite the following paper:

Shandross, L., Howerton, E., Contamin, L., Hochheiser, H., Krystalli, A., Consortium of Infectious Disease Modeling Hubs, et al. (2026). Multi-model ensembles in infectious disease and public health: Methods, interpretation, and implementation in R. Statistics in Medicine, 45(1–2), e70333. https://doi.org/10.1002/sim.70333

Shandross L, Howerton E, Contamin L, Hochheiser H, Krystalli A, Consortium of Infectious Disease Modeling Hubs, et al. Multi-model ensembles in infectious disease and public health: Methods, interpretation, and implementation in R. Stat Med. 2026;45(1–2):e70333. doi: 10.1002/sim.70333.

@article{shandross2026multi,
    title     = {Multi-Model Ensembles in Infectious Disease and Public Health: {Methods}, Interpretation, and Implementation in {R}},
    author    = {Shandross, Li and Howerton, Emily and Contamin, Lucie and Hochheiser, Harry and Krystalli, Anna and {Consortium of Infectious Disease Modeling Hubs} and Reich, Nicholas G. and Ray, Evan L.},
    journal   = {Statistics in Medicine},
    volume    = {45},
    number    = {1--2},
    pages     = {e70333},
    year      = {2026},
    doi       = {10.1002/sim.70333},
    url       = {https://onlinelibrary.wiley.com/doi/10.1002/sim.70333},
}

HubDocs site

To cite the hubverse documentation site, please use the format below. Be sure to update the release number and date. To find the most current release number and date, go to the hubDocs GitHub repository and look for the information in the middle of the right-hand column under Releases.

Citation follows APA 7th edition software citation style.

HubDocs citation

Consortium of Infectious Disease Modeling Hubs. (2025). HubDocs: Documentation for collaborative modeling hubs (Version 5.1.0) [Software documentation]. GitHub. https://github.com/hubverse-org/hubDocs Educational site available from: https://docs.hubverse.io/en/latest/

Hubverse landing website

To cite the hubverse landing website, please use the format below.

Citation follows APA 7th edition software citation style.

Hubverse website citation

Consortium of Infectious Disease Modeling Hubs. (2026). Hubverse [Website]. https://hubverse.io/

Specific hubverse packages

To cite a specific hubverse R package, such as hubUtils, run citation("hubUtils") in your R console to find the appropriate text.
To cite a specific hubverse Python package, such as hub-data, please use the format below. Be sure to replace the text inside <angle brackets>, including the package name, release number, date, and links. To find the most current release number and date, search for the specific package in PyPI or find the package in the hubverse Python packages page and look for the information in the middle of the right-hand column under Releases.

Citations follow APA 7th edition software citation style.

Hubverse Python package citation

Consortium of Infectious Disease Modeling Hubs. (<release year>). <package name> (Version <version number>) [Software]. GitHub. <repository URL> Package available from: <PyPI URL>

For example, to cite the hub-data package, use:

hub-data citation

Consortium of Infectious Disease Modeling Hubs. (2025). hub-data (Version 0.2.0) [Software]. GitHub. https://github.com/hubverse-org/hub-data Package available from: https://pypi.org/project/hubdata/0.2.0/

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